SE3120320

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10917
  • Fragaria vesca
  • SE3120320
  • Mutator
  • FrvM13
  • unanchored:7468829-7469244
  • TAAAAAGAA
  • AGGATTAAATTCAGTTTGCCACCTCGTACTTTAGGTCAATAATCAGTTTGGTCCCATATCTTTTTTTTTAATAATGTTGGTCCTTGTACTCTCAAATGACATCATCTAAGTCCAAAATTTGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAGA                    A                                C         --                               AAT        ---               G   TTTA  -G       -----       - ---TT     -  GAAAAAGGACTTTTTTTCTTCTTTAGAATGTTTATTTGC
        AGGATTAAATTCAGTTTGCC CCTCGTACTTTAGGTCAATAATCAGTTTGGTC CATATCTTT  TTTTTTAATAATGTTGGTCCTTGTACTCTCA   GACATCAT   CTAAGTCCAAAATTT AAT    GT  CAAAAAT     GGGTGAG T     GGTCC TT                                       
        |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||   ||||||||   ||||||||||||||| |||    ||  |||||||     ||||||| |     ||||| ||                                        
        TCCTAATTTAAGTCAAACGG GGAGCATGAAATCCAGTTATTAGTCAAACCAG GTATAGAAG  AAAAAATTATTGCAACCAGGAACATGAGAGT   TTGTAGTA   GATTCAGGTTTTAAA TTA    CG  GTTTTTA     ATAAACG C     TTTGA TG                                       
AAGAAAAA                    G                                A         AA                               ---        TTT               A   -TAC  AA       TTATA       A TGAAC     C  TACCCCTAGGTGTAAACTCGAAAAATTGGATGTTTATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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