Plant MITE

SE3130324

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10921
Fragaria vesca
SE3130324
hAT
Frvh29
LG3:31074245-31074648
ATTGAATG
ATTGAATGCAGGCCCGGA

Secondary structure and sequence

TSD TIR

5'

3'

    G   G          -------C   - ----  TTTTAA   CTGATTCGAACTCTCAGAGTTGAGCCCCTAATTTTTTTTTCATATACAAAATAACATATAGCATCCAAAAATATTTAATTTATAATTAATAATATATGTTTATATAATTCAGTCAATTGCTTTTGGGCCCCTCATCACATGTGATTGCCCTTATTTTAGAATATT
 ATT AAT CAGGCCCGGA        CTG A    GA      GGC                                                                                                                                                                     
 ||| ||| ||||||||||        ||| |    ||      |||                                                                                                                                                                      
 TAA TTA GTCCGGGCCT        CTC G    CT      CAG                                                                                                                                                                     
G   G   -          AAACTTAT   C TCTT  ------   AACACTGAGTCCCGAGTATTTAGATTCTCCGGATTTTTATAAAAAATATCAACAGGTCTTTTTTTTTTAATATCAAAAAATAACACGTTAATTAGTCTGTTCATACCTTTTCTCCATTTAATTTTGAATTACTTTTCACTTCTGTAGACTGTACTTAATTTCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130324

ATTGAATGCAGGCCCGGACCTGAGATTTTAAGGCCTGATTCGAACTCTCAGAGTTGAGCCCCTAATTTTTTTTTCATATACAAAATAACATATAGCATCCAAAAATATTTAATTTATAATTAATAATATATGTTTATATAATTCAGTCAATTGCTTTTGGGCCCCTCATCACATGTGATTGCCCTTATTTTAGAATATTTGTCTTTAATTCATGTCAGATGTCTTCACTTTTCATTAAGTTTTAATTTACCTCTTTTCCATACTTGTCTGATTAATTGCACAATAAAAAACTATAATTTTTTTTTTCTGGACAACTATAAAAAATATTTTTAGGCCTCTTAGATTTATGAGCCCTGAGTCACAAGACTCTTCTGCCTCTATTCAAATCCGGGCCTGATTGAATG

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