Plant MITE

SE3120326

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10923
Fragaria vesca
SE3120326
Mutator
FrvM10
LG1:8709801-8709987
TAATTAAAG
TAATTAAAGGGAAGTGAAATCTACACTCCTCAAATTGTAATCCACACCCTCATTTTCTATTT

Secondary structure and sequence

TSD TIR

5'

3'

       AA     A               -  C              A CC  -           ATGTTA    AAATTTTGTTCTTAGTGACTTAA
  TAATT  AGGGA GTGAAATCTACACTC CT AAATTGTAATCCAC C  TC ATTTTCTATTT      ACTA                       
  |||||  ||||| ||||||||||||||| || |||||||||||||| |  || |||||||||||      ||||                        
  ATTAA  TCCCT CACTTTAGGTGTGAG GA TTTAACATTAGGTG G  AG TAAAAGATAAA      CATT                       
AA     --     A               A  -              C -A  A           ---CAT    AGTAAATGTATTCTTCTGTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120326

TAATTAAAGGGAAGTGAAATCTACACTCCTCAAATTGTAATCCACACCCTCATTTTCTATTTATGTTAACTAAAATTTTGTTCTTAGTGACTTAACTTTTGTCTTCTTATGTAAATGATTACTACAAATAGAAAATAGAAGCGTGGATTACAATTTAGAGAGTGTGGATTTCACATCCCTAATTAAA

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