Plant MITE

SE3120329

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10926
Fragaria vesca
SE3120329
Mutator
FrvM60
LG7:4739278-4739517
ATATCTTAA
GGACTCGACTTCAATGACCATGTATGGTCACTTGCAAGTGACCAACACCAATGGGAAAGAGACACGTGTCCTGTTAAACAGTT

Secondary structure and sequence

TSD TIR

5'

3'

ATATCTTAA   CTC     CAA    CAT  ATG      T   A                  A   A        T  T TT        -------TAA    GACTTTGAGGACACTAC
         GGA   GACTT   TGAC   GT   GTCACT GCA GTGACCAACACCAATGGG AAG GACACGTG CC G  AAACAGTT          GTTC                 
         |||   |||||   ||||   ||   |||||| ||| |||||||||||||||||| ||| |||||||| || |  ||||||||          ||||                 A
         CCT   TTGAA   ACTG   CA   CAGTGA TGT CACTGGTTGTGGTTACTT TTC CTGTGCAC GG C  TTTGTTAA          TTAG                 
AATTCTATA   TTT     CCC    TTC  AAA      T   C                  C   A        C  T TT        TTTATATTTA    TTAATGGTTATTGGGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120329

ATATCTTAAGGACTCGACTTCAATGACCATGTATGGTCACTTGCAAGTGACCAACACCAATGGGAAAGAGACACGTGTCCTGTTAAACAGTTTAAGTTCGACTTTGAGGACACTACATGGGGTTATTGGTAATTGATTATTTATATTTAATTGTTTTTCTGGCCACGTGTCACTTCTTCATTGGTGTTGGTCACCTGTTAGTGACAAAACCTTGTCACCCAAGTTTTTTCCATATCTTAA

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