SE3130330

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10927
  • Fragaria vesca
  • SE3130330
  • hAT
  • Frvh6
  • LG3:27433607-27433790
  • ATTACTTA
  • ATTACTTAGTCAGTAGTGTTCACATGGTCATATAGTGACCAAAGAAATCATGGTCAATCACCGTTAAATATAAATCTAAGGGTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    CT        A     C                AC                          AA  A             A  AAACAAAACAACTTAA
ATTA  TAGTCAGT GTGTT ACATGGTCATATAGTG  CAAAGAAATCATGGTCAATCACCGTT  AT TAAATCTAAGGGT GA                
||||  |||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||  || ||||||||||||| ||                C
TGAT  ATTAGTCA CACAA TGTACCAGTGTATCAC  GTTTCTTTAGTATCAGTTAGTGGCAA  TA ATTTAGGTTCTCA CT                
    TC        C     A                CA                          CC  C             -  ATTCAAAATAAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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