SE3130333

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10930
  • Fragaria vesca
  • SE3130333
  • hAT
  • Frvh18
  • LG5:3415869-3416057
  • TGCTCTAT
  • CAATGTTCTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TGCTCTAT              TCC   TCTAAAGCCGATTAATCCCCGCCTAGGCATTAGGCGGTACTTCACTGTTTCTGTCTAGAGAGCTAAAA
        CAATGTTCTAAAAA   CCG                                                                    
        ||||||||||||||   |||                                                                     
        GTTACAAGATTTTT   TGC                                                                    
TATCTCGT              ---   AATCCGCAATCAACCCGCCTGTTGGCCACTGATCGCAGATCTGTCCAATTAGCCCTCTAATTAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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