SE3150336

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10933
  • Fragaria vesca
  • SE3150336
  • PIF/harbinger
  • FrvP24
  • LG1:1945573-1946171
  • TTA
  • AGGGCATCTCTAAAAATGGTTGCCATACCTAAATTCATACTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TT             A        C     C              -----    C  TAAAAATTCATCTCCAACAATTAAAACTCATACTCAATTATGGGTTCCTACTACACAGACGACCCAAAATGGGTCGAGTTGCAAGGAGGAAACCCAAAACTGTAGACGCGGGACCCAGATGGCAACAAAAGGCAGCAGGTGCACGTGAAAGACTGGGTAGCGGCAGGAGCTACACGCGGTGAGCTTGGTCTGTGGAGAACGCGCGCTAAAGACAGAAAAACGGGCAGGCGAGGAGCGCGCGGGAG
  AGGGCATCTCTAA AATGGTTG CATAC TAAATTCATACTTA     AAAC CA                                                                                                                                                                                                                                                     
  ||||||||||||| |||||||| ||||| ||||||||||||||     |||| ||                                                                                                                                                                                                                                                     C
  TCCCGTAGAGGTT TTACCAAC GTATG GTTTGGGTATGGGT     ACTC AA                                                                                                                                                                                                                                                     
AT             G        A     A              ATAAA    -  TGGGTTTGGGTAATGATAAGTTTGAGTATAAAGTAGAGGTTGGTAATATAGTTTTGGGTATGAGTATGGGTTTAAAAAAAGTAAGTTTAATAAATTAAAAGCCGGATAAAAAAGACCTGGACTACTAAACTTACTAGTAAGTTAGACCCGGCTCGCAAAAACCTGGAAACCTCCCAGTCTTCGCTCGAGTGCACCAAGTTGGCGTCCACACGTAGAGGGCGAGTGCGCACTAACCGCGCAGAGCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End