SE3150338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10935
  • Fragaria vesca
  • SE3150338
  • PIF/harbinger
  • FrvP12
  • LG6:599869-600193
  • TAA
  • AGGCCTAGTTTGGTACAGCTTCGCTTTTAAAAAAATCAGCTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C           CA   -TC     TAA      CA   T  ATCC    - TT  GATTTTATAGTGTTTGGTAAATGAAAAAAAAACAGCTTTTTTTGAAAATTACAAGTCACTGGCAGCAGCTTTTAGAAGCAACCTGAAGGTTACTTCTGAAAGCAGC
  AGG CTAGTTTGGTA  GCT   GCTTT   AAAAAT  GCT CT    GAAT T  TA                                                                                                          
  ||| |||||||||||  |||   |||||   ||||||  ||| ||    |||| |  ||                                                                                                           
  TCC GATCAAACCAT  CGA   TGAAA   TTTTTG  CGA GA    CGAC T  GA                                                                                                          
AA   C           AA   CAC     TTG      -A   C  ----    A --  CGCTTTTATTAGTCGACACTTAATTTTGTCAAAACACAAACCATTTATAATCAAAATTTTCACGACGGTTCTATTTTAAATAATTTTAGATCACAAAAATCACTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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