Plant MITE

SE3120339

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10936
Fragaria vesca
SE3120339
Mutator
FrvM40
LG7:4856510-4856706
GTAGTCAAA
GTCAAAGGATTCAAATTTGCCAATCACATTTACTTGACCACCCCAATAACTACCATCTAGATTGGTAACATATGTCTC

Secondary structure and sequence

TSD TIR

5'

3'

GTA T A                       -A         C               C            A       T   TTCAAA     TT  TTT
   G C AAGGATTCAAATTTGCCAATCAC  TTTACTTGA CACCCCAATAACTAC ATCTAGATTGGT ACATATG CTC      TTGTT  AC   
   | | |||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||| ||||||| |||      |||||  ||    
   C G TTCTTAAGTTTAAACGGTTAGTG  AGATGAACT GTGGGGTTATTGGTG TAGATCTAACCA TGTGTAC GAG      AATAG  TG   
AAA T A                       AA         A               A            C       -   TAAAAA     -T  TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120339

GTAGTCAAAGGATTCAAATTTGCCAATCACATTTACTTGACCACCCCAATAACTACCATCTAGATTGGTAACATATGTCTCTTCAAATTGTTTTACTTTATTGTTGATAAAAAAATGAGCATGTGTCACCAATCTAGATAGTGGTTATTGGGGTGATCAAGTAGAAAGTGATTGGCAAATTTGAATTCTTAGTCAAA

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