SE3150341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10938
  • Fragaria vesca
  • SE3150341
  • PIF/harbinger
  • FrvP4
  • LG5:13404020-13404501
  • TAA
  • AGGCCTCGTTTGGTTCAAGGATTGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CAA   TT     ------------G         GGAAAATTGTTCCTTTCATTTGTTTGGCACACCTAAGAAAATAAAAGACTTTACTATAATATAGAAAAATAGATGGGAAATTGGATCCTCCCACATACCATGGGATTCAATCTCCCTCATACTTTCCCAACATTAATTGTACATTAATTGCATCTTTCAAATATTATATTAATGAATGTTATTACCAAATTACCC
  AGGCCTCGTTTGGTT   GGA  GGAAA             GTTGGGAAA                                                                                                                                                                                                   
  |||||||||||||||   |||  |||||             |||||||||                                                                                                                                                                                                    
  TCCGGAGCAAACCAA   TCT  CCTTT             GAAAGGATA                                                                                                                                                                                                   
AA               CAA   TT     AACCAAGGAATCA         CATGTATCCTTTCATTTAAAGGATAATCAAAGGTATGGTTCACAAACCCTTGCAGTCCTTTCATTGATCCTTTACATAAAATAAAAGGAAAGGTTACAAACCAAATACGTACCTATCCTTTTGTTCATTATAATTAAATGGTTAATATATAGGAATCATAATTTTATATTTTATAAGTTCTAAGTTTATAAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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