SE3150342

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10939
  • Fragaria vesca
  • SE3150342
  • PIF/harbinger
  • FrvP11
  • LG4:1180389-1180739
  • TCA
  • AGGCCTCGTTTGGTTTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC          ----    -------T    -------        --    ATTAATTCC      ---- CATGGGAAGAGAAAGTGAACAGGAATAAAATTTCAAGAGAAGTTTGTATTCTGATGTTTGGTAACGCAAAAAAAGTCATTGGGAAAGTTCTTAAAAAATATAATAAAATATTATGATGT
  AGGCCTCGTT    TGGT        TGCA       GAAAGGAA  AGTA         TCTCTC    C                                                                                                                       
  ||||||||||    ||||        ||||       ||||||||  ||||         ||||||    |                                                                                                                        
  TCCGGAGCAA    ACCG        ACGT       TCCTTTCA  AAGT         AAAGGA    A                                                                                                                       
AC          AAAA    CCTTTTAT    TGTACTA        AC    ---------      CGCA ACCTTTTCGGTTTCCTTTACTTTCTGAAAGGACTAACTTTCCTTTTATACCCCCTTTCACCGAGTAAGGTTTTAGGTTACCTTGGTGAAAGTAAGTAAGAAAGAGACATAAATAATGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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