SE3120343

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10940
  • Fragaria vesca
  • SE3120343
  • Mutator
  • FrvM30
  • LG6:14787402-14787589
  • TAAACGTAG
  • ACGTAGGGAACTGAAATTTACACTCCTAATTTTATAATTCACACTCCCACTTTCCTCTTTTGGTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA    --     AC                A               C      -      C   T     TTT      TGTCTTTAGTGACATG
   ACGT  AGGGA  TGAAATTTACACTCCT ATTTTATAATTCACA TCCCAC TTTCCT TTT GGTAA   AAATCA                
   ||||  |||||  |||||||||||||||| ||||||||||||||| |||||| |||||| ||| |||||   ||||||                T
   TGCA  TCCCT  ACTTTAAATGTGAGGA TAAAATGTTAGGTGT AGGGTG AAAGGA AAA CCATT   CAAAAG                
  A    AA     CC                A               A      G      A   C     --T      TGTTTTTTTTGTTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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