SE3130346

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10943
  • Fragaria vesca
  • SE3130346
  • hAT
  • Frvh33
  • LG6:22168726-22169135
  • GTCCTCGA
  • TCGACAGAGGCGGAACTGTGTTTGAGTCTGGGAGGGTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCC    ----   A      A  - T   -T    -C    A         -------CCCCTGC     TT  C TACCTCCTTCATTAGCTAACTAAATTACCTTAACAATTACAATTATACTATATTTGAACCCCTATTAGATAACATTTGGAAGATTCTTTTTCTTTTGATATGATATTTTGGATACTCTTTCTCTTTTAATTTGATATT
    TCGA    CAG GGCGGA CT G GTT  GAGT  TGGG GGGTTTAGA              TAGCT  TG A                                                                                                                                          
    ||||    ||| |||||| || | |||  ||||  |||| |||||||||              |||||  || |                                                                                                                                           
    AGCT    GTC CCGCCT GG C TAA  CTCA  GCTC CCCAGATTT              AAACA  GT A                                                                                                                                          
        CCTG   C      C  T C   TT    AT    -         ATATTTTTAATAAA     --  - GCATTTGTAGTTTAACTTTACATTTTACTTGTTTAATAATTGTATTTCATTACAAAAAACTCGAAAAATATCTAGTTTTAAGTTACAAACTTATAGTTAGTTCGTGGTTTCAATTCTAATTTACTTAAATAAGCAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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