SE3150360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10957
  • Fragaria vesca
  • SE3150360
  • PIF/harbinger
  • FrvP7
  • LG2:10238016-10238382
  • TAA
  • AGAGCAACTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      A        GA        ----   -----       - GCTATTTTAGAAAGCGTGTTTAGCTTTTTTGGATGTTTTAGGAGCTCCAGCAGACTAGCCAAACTTAAGCTATTATAACTTTTAGCTATCTCGCTGACTCAGATGAGGCTAGCTATAATTTAATGCATTCTTTATAAGAT
  AGAGCA CTTTAGCA  CTCTCTAT    TTT     AGCTTTT A                                                                                                                                            
  |||||| ||||||||  ||||||||    |||     ||||||| |                                                                                                                                            A
  TCTCGT GAAATCGT  CGATCGGT    ATT     TAAAATC G                                                                                                                                            
AA      A        TA        AAAA   CAATT       A TTTAATCGATTTTACAGTAAAACCGATCGGTGAAATCTTTACACCAACGTAGTTACGAGAGATAAAATCGATCGTAATGTAGTTGTAATAAGAAGTTTATCTTTAATTTATCAAATTTATATAAATATATAGTGTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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