SE3150361

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10958
  • Fragaria vesca
  • SE3150361
  • PIF/harbinger
  • FrvP1
  • unanchored:7162712-7163050
  • GCT
  • GAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
  GCTTCATAA    CAAG          GGGA     ---  -     -T    T  --- A  -    CTTGAACAAAAATTA     -----  A   ATCAAATTACAACATTGAGAACAAATTTACCAAATTTATTTACACTATTTATATGAAGTTAAACAAAATTACAACTATGAGAACAA
           GAGA    CTATGGTACT    TGTAT   AT CCTAC  TTTA TT   T CA TGTA               CAATG     TT TGA                                                                                      
           ||||    ||||||||||    |||||   || |||||  |||| ||   | || ||||               |||||     || |||                                                                                       
           CTTT    GATACCATGG    GCATA   TA GGATG  AATG TT   A CT TTGT               TAAAC     TT TCA                                                                                      
AATACTTCGCC    --AA          ATGG     CAC  T     TA    -  TAC -  G    --------------A     ATCAG  -   ACATTACAACTCAGCATAACAAACATTAGAACAAGATTATTAACATTAATGTTTTACATGTTAGTAAAATGTTGAAAAAGTGGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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