SE4140005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10965
  • Theobroma cacao
  • SE4140005
  • CACTA
  • Ca1
  • Tc07:12298932-12299249
  • TGT
  • CACTACAATAAAATTGAGTTTTAATTACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TGT            A    G  TT   TA   T       G AACCTTTTTTTTGTATAGTGAAATCCTAAAAATTGTACCCATTTAAATTTTTAATTTCATTTTTTTCGCATTTAATACTAATATAAAGTAATGCAACGTTTGCTGGTGTATGTAATT
   CACTACAATAAA TTGA TT  AAT  CAC TTTTTAA T                                                                                                                     
   |||||||||||| |||| ||  |||  ||| ||||||| |                                                                                                                      
   GTGATGTTGTTT AACT AA  TTG  GTG TAAAAAT T                                                                                                                     
TGT            A    G  TT   TC   -       - TTAAACATAATTTTTATAAAAATTATTGTGAAAAAAATATAAAAAATCTTGTAAAAACGTCTAAACTGAAGTGATATATTTAAAAATCTACATAATACTTATTTTACATTGTTATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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