SE4120009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10969
  • Theobroma cacao
  • SE4120009
  • Mutator
  • M4
  • Tc00:34629465-34629992
  • TTATATTTT
  • GGGTAAAATACCCCTACCCTTTTAAGTTTTAATCGAAATTTCATATAAGTTTATTAGTTTTTAAAATGGACATTTCGTCCCGAGAG

Secondary structure and sequence

TSD    TIR
5'



3'
TTATATTTT     A       C       TT       A         TC   T                         A    G    G    TACAAACATCATTAAT     TTATAAAAAAAAGTAAAATGCCCTTTCTTTCTTGATTAATTTAAAAAATTATTATTATATTTTTTAAAAAAATACAAAATTAAAAAGCACAAATCGATGCTCCCTAGCTCCACAAGAAAGTAGAGCACTAAACAATGCTCCCCAAGGGAGC
         GGGTA AATACCC TACCCTT  AAGTTTT ATCGAAATT  ATA AAGTTTATTAGTTTTTAAAATGGAC TTTC TCCC AGAG                AGAGA                                                                                                                                                       
         ||||| ||||||| |||||||  ||||||| |||||||||  ||| ||||||||||||||||||||||||| |||| |||| ||||                |||||                                                                                                                                                       T
         CCCAT TTATGGG GTGGGGG  TTCAAAA TAGCTTTAA  TAT TTCAAGTAATCAAAAGTTTTACCTG AGAG AGGG TTTT                TGACC                                                                                                                                                       
TTTTATATT     A       A       -T       C         TA   T                         -    G    G    -----TTTATAAAAAG     TGTGCATCTAGGTCAGCAATCACAAAGGCAGTTAAACTACTACACCGTTCCCGTTTTTCTATTAAAATGGGAACTAATTAAAAATTTTGATAATATATTAAAATAATTAAAAAATAATTAATTTTTTTTCGAGAGTGGATCTCTCGTAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End