SE4120010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10970
  • Theobroma cacao
  • SE4120010
  • Mutator
  • M5
  • Tc09:19492516-19493014
  • TTGAATGTT
  • GGCTAAATACCCAAATAAGCTCCTAAACTATGTCAAAAAAATCAATTCAGCTCCTATTCTTTTATTACGTTCAAATAAGCCCCTGAACTTTTCTTTCGAGTCAAATAAGCCCCTTTCCCTAATAGTTGACTAACTTCTATTAGTCAACTGTACATGTGGCACTTTTATACCATGTCATCTACCACGTGGCAGATGATGTGGCATTTAATATTGTTGATTAGGATCAAGTAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
TTGAATGTT          C             A     T  --C                                  G                       C   C                          A                        T          C               C    A                        T                  CAA  AAA  GGTAAAA
         GGCTAAATAC CAAATAAGCTCCT AACTA GT   AAAAAAATCAATTCAGCTCCTATTCTTTTATTAC TTCAAATAAGCCCCTGAACTTTT TTT GAGTCAAATAAGCCCCTTTCCCTAAT GTTGACTAACTTCTATTAGTCAAC GTACATGTGG ACTTTTATACCATGT ATCT CCACGTGGCAGATGATGTGGCATT AATATTGTTGATTAGGAT   GT   TG       
         |||||||||| ||||||||||||| ||||| ||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||   ||   ||        
         CCGATTTATG GTTTATTCGGGGA TTGAT CA   TTTTTTTAGTTAAGTCGAGGATAGGAAAATAATG AAGTTTATTCGGGGACTTGAAGA AAA CTCAGTTTATTCGGGGAGAGGGATTG TAACTGATTGAAGGTAATCAGTTG TATGTACACC TGAAAATATGGTACA TAGA GGTGCACCGTTTACTACACCGTAA TTATAATAACTAATCCTA   CA   AC       
TTGTAAGTT          T             C     T  ATT                                  A                       T   A                          G                        C          A               A    C                        T                  -AA  --C  GAATGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End