SE4140014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10974
  • Theobroma cacao
  • SE4140014
  • CACTA
  • Ca1
  • Tc09:19460673-19460991
  • TTA
  • ACACTATAACAAATTTGACTTAAAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         C   T    --C    AG  ---         TTAAAATGTGCTATTAAAAATATTTTTAATAATATTTTTTTATGTATTTTAGAACATTTTTGTAGATCTAACTTCATTATATAAATTTTTAGATGCAGTATGAATAAAATGTAATCATA
  ACACTATAA AAA TTGA   TTAA  AC   AGCACATTT                                                                                                                       
  ||||||||| ||| ||||   ||||  ||   |||||||||                                                                                                                       A
  TGTGATATT TTT AACT   AATT  TG   AGAAATCTG                                                                                                                       
AT         -   T    CAA    AG  TAA         CTATATAAAAAAAGATATCATTTTAAAATTTTTCATGTTGATAAATTTGGAAATTAAAATGAAAAAAGTGTAAATTATCGTTATATTTTTTTACATTAGAAATGATCACATACATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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