SE4120017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10977
  • Theobroma cacao
  • SE4120017
  • Mutator
  • M3
  • Tc06:1112554-1113092
  • TATAATCTT
  • GGCATAATGCTCAAATAAGCTCCTAAACTATTCAAGAATATTCAAATAAACCTTTAGTCCTTTATTACAATCAGTCAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATCTT         CT    T   C       C    C     T          AC     GT C         A         ----------      T TTTTTATTTTGAGTCAAATAAGCCTTTATTACTAATGATTGACTAATTGTTATTAGTAAAAATGCCACTTGTCATTTTATGTCTATATGACACTGACATGGCATTGATGTAGAGGATGAAAAGTATCATATGGTCATATGTTCATGCAAAATTAGCATGTCATGTTATC
         GGCATAATG  CAAA AAG TCCTAAA TATT AAGAA ATTCAAATAA  CTTTA  C TTTATTACA TCAGTCAAG          CCCTTA A                                                                                                                                                                         
         |||||||||  |||| ||| ||||||| |||| ||||| ||||||||||  |||||  | ||||||||| |||||||||          |||||| |                                                                                                                                                                          
         CCGTATTAT  GTTT TTT AGGATTT ATAA TTTTT TAAGTTTATT  GAAAT  G AAATAATGT AGTTAGTTC          AAATAA A                                                                                                                                                                         
TTCTAATAT         AT    T   A       A    A     T          CA     AT A         A         AGAAACATGA      - ATTCGGTTTATTTGGGAATTTGAAAATAAAACTTAGTTTATTCGCAAATACTGATTACTAAACTGAATTAGTTTAATAGTAAACAATAAGATATGGTGTATTGCGACTGCACCGTATGATTTTATACTATTAACAACTACTACACCGTATAACCATATGGTATTAACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End