SE4130018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10978
  • Theobroma cacao
  • SE4130018
  • hAT
  • Hat4
  • Tc04:9640832-9641393
  • ATCATAAT
  • ATTAGGGGTGAGCAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCATA          A       TAAATC                -  G ACCGAAATGAGTTCGATTTTTTCAGTTTGGTTAGCTTGATTTTTTGGATAGTTCGGTTAGGATAGTTCAAATTCGGTTGGTTTCAGTTAGAAAAATTTCTACCCGAACTAACCAAACTAACCAAACTTAAGTAAGGGTATTATGGGACTTTTGCATAAAAAATAAATCTTAAACCTAATATCTTTTCCTCTTTAGTTTCTCTTTAATTATATGAGTATCCATCTTATTTAT
      ATTAGGGGTG GCAAATG      GAATCGAACAATCGAA CT A                                                                                                                                                                                                                                       
      |||||||||| |||||||      |||||||||||||||| || |                                                                                                                                                                                                                                       T
      TAATCCCCAC CGTTTGC      AAGTTAATCAAGTCAA AT C                                                                                                                                                                                                                                       
TAAGCC          A       -CAATA                A  - TACAGATGATTGGCTTGATTGACTTGAGTATAAATTATTATTGACTTTGATTTGGCTTGATATGTTTATTGGCTTAATTAGCTTTGGCTTGTTTAAACCAATCAAACCAAGTCAAAGGTTTTTAGCTTGAACTGTTTAAAAAATAAAAAAACAAACATATATAAATAAATACGATATAAAAAAATTATTTAGTTATGATATTTTTATAATTTTTACTATCATTTTTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3