SE0610001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10979
  • Thellungiella halophila
  • SE0610001
  • Tc1/Mariner
  • St1
  • scaffold_23:1062183-1062426
  • TA
  • TACTCCCTCCGTTTCACAAAGAATGTCGTTTTAAGGTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                      A         A G       -----------------------------------     TTCACAAAGAGTGTCGTTTTATATTTTCAATGTATAATTTTAAACAATATTCCAGTT
TACTCCCTCCGTTTCACAAAGA TGTCGTTTT A GTTTTTT                                   TTTGT                                                         
|||||||||||||||||||||| ||||||||| | |||||||                                   |||||                                                         T
ATGAGGGAGGCAAAGTGTTTCT ACAGTGAGA T TAAAAAG                                   TGGGA                                                         
                      C         C G       TGTGAATAATTCTTTTAATAATTTTTATGATGAAA     AATAATTATGTAATTTATTGAAAAAAGAGATTAATTATGTAATTTAGTTATCCCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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