SE0610003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10981
  • Thellungiella halophila
  • SE0610003
  • Tc1/Mariner
  • St2
  • scaffold_13:2269238-2269499
  • TA
  • TACTCCCTCTGTTCAGAATTAGTTGATGTTTAAGGTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
                     G         ---A        GCACA    --TTAAG    CATTTAATATTTATTTT    A    AAAAAATTATCTATAATTCATTTAAATAT    -- A  C   AAAAAAACAATTTGCAGAATATAAA
TACTCCCTCTGTTCAGAATTA TTGATGTTT    AGGTTTTT     CAGA       GATG                 TTCT CACT                             TATT  C GC AAT                         
||||||||||||||||||||| |||||||||    ||||||||     ||||       ||||                 |||| ||||                             ||||  | || |||                         A
ATGAGGGAGACAAGTCTTAAT AACTACAAA    TCCAAAAA     GTCT       CTAC                 AAGA GTGA                             GTTA  T TT TAA                         
                     A         ATAC        AAAAA    TAATAAA    -----------------    -    --------------------------AAA    CA -  -   ATTACTTAAAAATAACAAAAACTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End