SE0630007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10985
  • Thellungiella halophila
  • SE0630007
  • hAT
  • Hat2
  • scaffold_16:3232725-3233410
  • CTTAAAAT
  • TAGGGCTGGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTAAAAT                C      -    GACTTTTCAA -  A     -    GGATCCGGATTTGCCGGATAATCAATTTTACTATCCGGATCCGGATCTGAAAACTCCGGATATCTGCAGGCCGGATATCTGGTTTGAACCGAATATTTACGGAAATCCGACTTGATATCCGGTTTCGTTGATTTAAAAAAAATGTTCAATTTTTAAAAATTATAATGAGATAACATATACTGTATAATTAAAATGCATCAACATAGCAAAAAATTATAAATACCAATAATTAAAAAACATTTAAATAGCATTCAAATAACATAAAATTTAAAAGTTTACATAGCAAAAG
        TAGGGCTGGAATGGAA TGGATA TCCG          G GT TTCGG ATCC                                                                                                                                                                                                                                                                                                 
        |||||||||||||||| |||||| ||||          | || ||||| ||||                                                                                                                                                                                                                                                                                                 A
        ATCCCGACCTTAATAA TAGGCC TAGG          C AT AGGCT GGCC                                                                                                                                                                                                                                                                                                 
TAAAATTC                -      A    ---------- C  -     A    ATAGGCCAGGATAGGCTAGGCATTTTTGGCTTATAAGCACGTCAAGTCTAGACCTAGACCTATCAATTTAATTCATAAGCCAATAAAGCCTATGCCTAGGCCTATTATATTTTAAAACTTTAACCTATAGGCAATAGGCAATAGACAAATAATTTATAAATAAATAAAACTATTATAAATAACTTTAAGTATAATGTACTATTAAAAGATAAAATCTAATACTCTCTTCTTGTACTTTTACCTATTGTGTACTTATACTTCTATTTAATTGAAAAGATAATGATAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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