Plant MITE

SE0630010

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10988
Thellungiella halophila
SE0630010
hAT
Hat4
scaffold_3:6826202-6826404
GAACTAGA
CTAGACAGTGGCGGAG

Secondary structure and sequence

TSD TIR

5'

3'

GAA    --A           GCAGAAGA          GGGG -- AA     ATATTGTTAAAATAATATGGTTATGGGGGTAAAAAAAACAATTATGAGTGGGGGCA
   CTAG   CAGTGGCGGAG        TTTTTTTACT    C  A  AATTA                                                        
   ||||   |||||||||||        ||||||||||    |  |  |||||                                                        T
   GATC   GTCACCGCCTC        TGAACGTGAT    T  T  CCCCG                                                        
  A    AAG           ------GA          ---- CT --     TCAACGGGGGCTATTTTAAACAATCTAATCACGTTTAAATAATTTGGTAATTTATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630010

GAACTAGACAGTGGCGGAGGCAGAAGATTTTTTTACTGGGGCAAAAATTAATATTGTTAAAATAATATGGTTATGGGGGTAAAAAAAACAATTATGAGTGGGGGCATTTATTTAATGGTTTAATAAATTTGCACTAATCTAACAAATTTTATCGGGGGCAACTGCCCCTTCTTAGTGCAAGTAGCTCCGCCACTGGAACTAGA

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