SE0650013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10991
  • Thellungiella halophila
  • SE0650013
  • PIF/harbinger
  • To4
  • scaffold_10:8866596-8866872
  • TGA
  • AGACCATCATTATCGTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                   TTTTTT    A         -------GA     -------  ATAATAAATATAATCAAATGATACATTTATTTGAAGAAAAGTTTCTTATCTGGGAACCATAAAATAAGTTTCTTCTGCCAC
  AGACCATCATTATCGTTAG      TGTG GTTTCTTAT         ATATT       TA                                                                                 
  |||||||||||||||||||      |||| |||||||||         |||||       ||                                                                                 A
  TCTGGTAGTAATAGCAGTC      ATAT TAAAGAATA         ATAAT       TA                                                                                 
AG                   TTTGGT    C         AAAAAAAAA     AATAATA  AAACATATTTTTGCACTGGGTGTTTTGGTTTTTGGGTTATATAAAATAATAATATACAACAATTGGTAAATTCATCTCTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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