SE0650014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10992
  • Thellungiella halophila
  • SE0650014
  • PIF/harbinger
  • To5
  • scaffold_5:3008782-3009202
  • TTA
  • AGGGGGTGTTATTCAATCACGGTTTTTAATAGAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                   C  T      TA      AAATCC     CAATC    ATTATTCAACTAA GATTCTAAATAATGTTTTAAAATCAAGTGTTATTGGTTCTTTTGATTGTAAATCATATTTAAGAGGTTTTAAAGTTTGGTGTTATTCAATAAAGATTTCAAATCTTTCATTAAAATCCAGTGTTATTCAAAACTAAATAATTTTTA
  AGGGGGTGTTATTCAATCA GG TTTTAA  GAATTT      AACCA     CACT             T                                                                                                                                                  
  ||||||||||||||||||| || ||||||  ||||||      |||||     ||||             |                                                                                                                                                   
  TCCCCCACAATAAGTTAGT CT AAAATT  CTTAAA      AAAAT     TTAG             A                                                                                                                                                  
AT                   A  T      TA      AGATAC     ----A    ------------- AGATCTAAATTTTTAACTATAGTCAAACTACCTAAGTAAACAAATCTAAGATTTTAGAGACGTTATATGTGACCTAAAACTAAGATTATTAAATGAGTATTTTGAGATAATTTTAACTAAACTTTACTGAATTACATGTTTCTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End