SE0650017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10995
  • Thellungiella halophila
  • SE0650017
  • PIF/harbinger
  • To6
  • scaffold_9:5814635-5814892
  • TAA
  • AGAGCATGTCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -----------   CCCTCTTAAAGAGGTTCATCAGATATTAATTTTTTTTTTTAATTCAAAAATTAAAAAAAAAACTTTCGCCTAATGACATCTTGCCACCTGGACAAAATTG
  AGAGCATGTCCATTGGTG           AAC                                                                                                    
  ||||||||||||||||||           |||                                                                                                    G
  TCTCGTACAGGTAACTCC           CTC                                                                                                    
AA                  CTAACCTCTTT   AAGCCGAGCTCAAGTATTCGTCAAAACTAATTTTTTTTCTTTATTACGAATATACCTTTCCTAGCCAAGTAGTCCTGTTAGGACTTCTGGAGTCCAAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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