SE0620021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10999
  • Thellungiella halophila
  • SE0620021
  • Mutator
  • M1
  • scaffold_6:7828592-7829048
  • TTTTTTAAA
  • AAAGGGAAAATTCCATATAAAATCCTCAACTTAATTTCAATGAGTTTTTAAAATCATCAACTTTTCCTGTGTCCAGAAAAAACCTTCAAATATTTTTTTTACCCATTTTAAATCTTCAATTGTTATTCGTATAATTAATTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTT              A         C                        A     A          C               CC       A         CCC                          ATA    A     --   ATATACGAAACAATACTAAACGAAAATGGAAACATTATTTGAATCTCGTTGACAAACTAGCTACAGTACTCGTCG
      AAAGGGAAAATTCC TATAAAATC TCAACTTAATTTCAATGAGTTTTT AAATC TCAACTTTTC TGTGTCCAGAAAAAA  TTCAAAT TTTTTTTTA   ATTTTAAATCTTCAATTGTTATTCGT   ATTA TTTAC  AGC                                                                           
      |||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||  ||||||| |||||||||   ||||||||||||||||||||||||||   |||| |||||  |||                                                                           T
      TTTCCCTTTTAAGG ATATTTTAG AGTTGAATTAAAGTTATTCGAAAA TTTAG AGTTGAAAAG ACACGGGTTTTTTTT  AAGTTTA AAAAAAGAT   TAAAATTTAGGAGTTAATAATAGGCA   TAGT AAATG  GTT                                                                           
AAATTT              A         T                        A     G          C               TA       A         AAA                          CAC    A     AA   ATACTAAACCCCTAAAACGAAGTTAAAACAGCTCTAAATCGAATATAGCTCAAAATACAATTGGTAATAAATTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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