SE0650022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11000
  • Thellungiella halophila
  • SE0650022
  • PIF/harbinger
  • To8
  • scaffold_7:4758147-4758418
  • TAA
  • AGAGCATGTGCAACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ---    --   -A      - G A  AAGAAAAATAAA TTATAATATTAAAAAACTTTGTTTGCCACATGTCTGTTGGAGAGAAAGAAGAAGAAAAATAACCTATAATATATTGACATCTGTCAAA
  AGAGCATGTGCAACGG   AGAA  ATG  TGAGAG A A AG            T                                                                                        
  ||||||||||||||||   ||||  |||  |||||| | | ||            |                                                                                        A
  TCTCGTACACGTTGCC   GAGA  GGA  AAAGAA G T AA            A                                                                                        
AA                CCA    TG   CT      T - -  ------------ AAATTAATTTAATTTATTTCTTTTATCCATTTTCCTTCTTTGCATATGATTAATTCTCTGTATCCTCTGCAGAGAAAACTGTGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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