SE0620023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11001
  • Thellungiella halophila
  • SE0620023
  • Mutator
  • M2
  • scaffold_15:3578239-3578939
  • GTGTAATCT
  • CTCGGGAAAAAGGCCGATTAGTACCTCAACACCATCATCTGGTACCAAAAAATACCCAACCAATTTTAATAGGTTAATCAGTACCTGAACTTATTAAAATCGGTAAATACATACCTCAATAATGTTTTTTGGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGTAAT T                                       G      A          -   A    A                                                             -      --    GACGTCGTTTTAAATTTATTATACATTAAAGAAATCAAAATTGAAATTTTCGATTTGATTTTCCGAAAGTGTTTGAATCAAAATCAAAACCAAAATTGCAAACCTAAACCTACCATGAATCTCCGAAGAAGCGTTAGCATTCGACGATGAAGTCATTCCAATTTGATTTTGAACACCACCCAAATCCTAACTATCAATGTTTT
       C CGGGAAAAAGGCCGATTAGTACCTCAACACCATCATCTG TACCAA AAATACCCAA CCA TTTT ATAGGTTAATCAGTACCTGAACTTATTAAAATCGGTAAATACATACCTCAATAATGTTTTT TGGCCA  AAAC                                                                                                                                                                                                           
       | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||                                                                                                                                                                                                            
       G GCCCTTTTTCCGGCTAATCATGGAGTTGTGGTAGTAGAC ATGGTT TTTATGGGTT GGT AAAA TATCCAATTAGTCATGGACTTGAATAATTTTAGTCATTTATGTATGGAGTTGTTATAAAAA ACCGGT  TTCA                                                                                                                                                                                                           
CTCTAAT T                                       G      A          T   -    C                                                             C      TA    TGTAACTGAAAGACAGACAATCAGTTTGTATAATTGAACGTTTGCCTTAGGCTGAACCTATGGTGACACCTATGAGATAAGCTTACTTTGATTATGCTGCGGCAAATTCCAATTTTTAGATCTTTTTTCCGTTTTTGCTGCAGTAAAATTTAAATAATAGGTAATTTTTTTTTATGTCGTAGATATAGAAGAAAGCACCCTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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