SE0630025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11003
  • Thellungiella halophila
  • SE0630025
  • hAT
  • Hat5
  • scaffold_8:7046431-7046614
  • CTTGAAAC
  • CAGTGGCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGAAAC           GTATATACAATGA     GGGCAGTTGCCCCCAATAAAAAAAAATATTTAGTGTAAATTTGTAACAATAATACTAGTTG
        CAGTGGCGGAG             GTTGG                                                             
        |||||||||||             |||||                                                              
        GTCACCGCCTC             GTCTT                                                             
CAAAGTTC           ------------G     GTAAAAAGATAACCCCCGTTTTGCATAAATTACCCTTGTATATACGATAAATCACACCCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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