SE0650028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11006
  • Thellungiella halophila
  • SE0650028
  • PIF/harbinger
  • To11
  • scaffold_14:5306808-5307196
  • AAA
  • GGCTCCAACTGGTGATCAT

Secondary structure and sequence

TSD    TIR
5'



3'
AAA     C             AATTA      ------------------------     -  T        T  TATTCCTCTCC    -----  A    TTTTTACCATTTAAAAGGAATAACTATTACATGTCATTCCTCTTCATTCCTCTTTTAAAATAGAATGATAAAACAAATATATTCCCTATGAAATTTATTAAGGAACGAGAGGA
   GGCTC AACTGGTGATCAT     AGGAAT                        GGAAT GA GAGGAATG GC           ATTC     CT AAAT                                                                                                                 
   ||||| |||||||||||||     ||||||                        ||||| || |||||||| ||           ||||     || ||||                                                                                                                 A
   CCGAG TTGACTACTGGTA     TCCTTG                        ATTTT TC TTACTATC CT           TGTT     TT CCTT                                                                                                                 
AAA     A             --AAG      TTATCCTTACTATACCTTTTCCTT     T  -        -  -----------    TAATC  -    ATTTACATCTCTTCTTTACATTATTTAACAGTGTCATTTACCATAAGTATTTTAACATCTCTTCCTTACCTTGTTATATATATTATATGAAAATAATTAAAGGAAAAAAACGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End