SE0650035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11013
  • Thellungiella halophila
  • SE0650035
  • PIF/harbinger
  • To15
  • scaffold_1:18650927-18651176
  • TTA
  • AGGCTTTGATTGGTAACTTTGCGGAATGGCGGAATTGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   T                   -----      A CTTGCGGAATAGATTAAGCGACTTATAAGTCGCTTTTCTGCGGAATGACTTTTTCTTTGTATTTTTGTTAAGCA
  AGGCTTTGATTGGTAACTT GCGGAATGGCGGAATTGCG     GAAAAA T                                                                          
  ||||||||||||||||||| |||||||||||||||||||     |||||| |                                                                          A
  TCCGAGACTAACCATTGGA CGCCTTACCGCCTTAACGC     TTTGTG T                                                                          
AT                   -                   AAAAA      - TAAGGTGTACAAAAAACGGTTAGTTGTTTTTAGGCGCATTACTTTTTTATGTGTGTTTTTGCGTCTGACACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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