SE0650036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11014
  • Thellungiella halophila
  • SE0650036
  • PIF/harbinger
  • To16
  • scaffold_2:3235711-3235961
  • TTA
  • AGAGCATCTCCATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               ---ATGTAC    ATTTATGGGTCTTTTAGGAATAATTTAATATTTTTTTGGAGAGAGAGAAAAAAAAATTAAAACATTAAAAAAAAGAATAATTTTTAGCCAATCACAG
  AGAGCATCTCCATTA         TCCA                                                                                                 
  |||||||||||||||         ||||                                                                                                  
  TCTCGTAGAGGTAAT         TCGT                                                                                                 
AT               CGTAGATAA    TTATAATCCGTGTCTTTGGATCCATAAAAGGGATTTAAAACTACCTAACGAGGAATATATTCTCTGTTTCTCTAACAGAAAATGCGGTCCACCTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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