Plant MITE

SE0630037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11015
Thellungiella halophila
SE0630037
hAT
Hat10
scaffold_9:7849040-7849587
AGATAGAT
TAGATTAGGCCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

AGA  GA             ----T      ATTCAGTTCGGTTTCGGTTCGGAACCAATCGGTTCCGGATATTTCGGGTAGAGGAAGTTAGGATCCATCAGATATTTTTATAAATTTCGGTTCGGGTTCGGTACCTTTATTTCGGTTCGGTTCCGGTTCGGATAATCGGATCCGGATCTTTTGCCTCAAATTTTTAATTCGACTCACACTTTTTTAATAAAAAAAATTCAAAAATATATATATCAAAACTTAAAAATATACCCAAAAGTCCCAAA
   TA  TTAGGCCTGGGCA     TCGGAT                                                                                                                                                                                                                                                     
   ||  |||||||||||||     ||||||                                                                                                                                                                                                                                                      
   AT  AATCCGGACCCGT     GGGCCT                                                                                                                                                                                                                                                     
TAG  AG             TTTTT      AGGCTTATAGGCTTAGCCTAGGCTTTATCTCCATGGCTTAAGCTTGGCTTTAAAAATTTTTATAGGCTACCTAGAATTTGAGAATATGGGCTTCTTGGCCTTGGCTTGATCATGGCTTGGCTCTTGGCTAACCCATGGGCTTAATAGGTTTCATATTAATATATAGGAAGATTTATAATCAAAAAAAAAACTATAAAAACTATAAACCATATATAAAGACCAAAATGTCTGTATAAAAGAAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630037

AGATAGATTAGGCCTGGGCATTCGGATATTCAGTTCGGTTTCGGTTCGGAACCAATCGGTTCCGGATATTTCGGGTAGAGGAAGTTAGGATCCATCAGATATTTTTATAAATTTCGGTTCGGGTTCGGTACCTTTATTTCGGTTCGGTTCCGGTTCGGATAATCGGATCCGGATCTTTTGCCTCAAATTTTTAATTCGACTCACACTTTTTTAATAAAAAAAATTCAAAAATATATATATCAAAACTTAAAAATATACCCAAAAGTCCCAAAAATAAAGAAAATATGTCTGTAAAACCAGAAATATATACCAAATATCAAAAATATCAAAAAAAAAACTAATATTTAGAAGGATATATAATTATACTTTGGATAATTCGGGTACCCAATCGGTTCTCGGTTCGGTACTAGTTCGGTTCCGGTTCTTCGGGTATAAGAGTTTAAGATCCATCGGATATTTTTAAAAATTTCGGTTCGAATTCGGTACCTCTATTTCGGATCCGATTCGGATATTCGGATCCGGGTTTTTTGCCCAGGCCTAAGATAGAT

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