Plant MITE

SE0630044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11022
Thellungiella halophila
SE0630044
hAT
Hat13
scaffold_16:4436380-4436584
CTTATACC
TATA

Secondary structure and sequence

TSD TIR

5'

3'

CT    CCCAG        CTACTTGGACT  -   -- T   ----  ATTGACCCAGGTCAAGCTATAACAATGAAAACTTAAGCTTACTAATGCATCTTATTTCTAAAA
  TATA     TGGCGGAG           AT TAG  G GGT    CA                                                               
  ||||     ||||||||           || |||  | |||    ||                                                                
  ATAT     ACCGCCTC           CG CCT  A AAA    GG                                                               
CC    TCATA        -----------  T   TA -   AATT  CCCCAACTCCTTTTGTAGGTTGTATTTTAATCCCCCCAGTTAGCTTATTAAAAGTTGTTTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630044

CTTATACCCAGTGGCGGAGCTACTTGGACTATTAGGTGGTCAATTGACCCAGGTCAAGCTATAACAATGAAAACTTAAGCTTACTAATGCATCTTATTTCTAAAAGAATTTGTTGAAAATTATTCGATTGACCCCCCTAATTTTATGTTGGATGTTTTCCTCAACCCCGGTTAAAAAAATTCCTGCCTCCGCCAATACTTATACC

Copy Cancel