SE0610047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11025
  • Thellungiella halophila
  • SE0610047
  • Tc1/Mariner
  • St2
  • scaffold_1:2313331-2313594
  • TA
  • TACTCCCTCTGTTCAGAATTATTTGATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                               --------    -  -   TTTT ------------------------   TC      AT    TG  CT  CTTTTCAATGCAAAATTTAATGAATTTTTATAGTTTTTGACCTTTTATATT
TACTCCCTCTGTTCAGAATTATTTGATGTTT        TAGA AG GTT    T                        TGT  AAAATT  TTGA  TT  CA                                                   
|||||||||||||||||||||||||||||||        |||| || |||    |                        |||  ||||||  ||||  ||  ||                                                    
ATGAGGGAGACAAGTCTTAATAAACTACAAA        ACGT TG CAA    A                        AGG  ATATGA  TTTT  TA  TA                                                   
                               TTCCTAAA    G  T   ---- TTCCTAAGTAAATTAAAAATAAAA   --      --    --  --  ATAAATATTAAGTAAATTTATAGTAAGTCGGTTATTCTTTTGTTAGACGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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