SE0650048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11026
  • Thellungiella halophila
  • SE0650048
  • PIF/harbinger
  • To19
  • scaffold_13:7042477-7042773
  • ATA
  • GGCTTTGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA           AGATTCAGAATA        A          TAAACTGTATTTAAAATGATCTGTAATTTTTTATTATTCATAGATTTTATGCAGAACAAAAAAAATTAATATAAAAATAAAAATCTGCATGCAGATATTTACTTGCC
   GGCTTTGAATG            AATGCAGA TAATTGCAGT                                                                                                           
   |||||||||||            |||||||| ||||||||||                                                                                                            
   CCGAAACTTAC            TTACGTCT ATTAAATATG                                                                                                           
ATA           -------CATCG        A          TTTAATTTTTTATAATAATTTTTTTATGTAATCTTGACCTATATCTTGACCCACCTGACGAGTATAAAATCTCGCCAAGACCTTCTTTAAACAAAGAAACCAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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