SE0630052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11030
  • Thellungiella halophila
  • SE0630052
  • hAT
  • Hat16
  • scaffold_11:2622450-2623018
  • GTTTAAAC
  • GTTTAAACTAGGCCTGAATATTTTGGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                   A            GGACGGAAATTAACGGGTAAGGAATGAGAATAGAAATTTCGGGAATCTGAATATATATAGTACCCAAAGTATTCCCACAAAATAACGAGAGGAGAATTTACGGGTATGAGACGGGAACAGAAAATTCGGGAATCAAAACATACTACACATACAATCCCAAAATAAAATATAACCGGGAAAGAGACGGGAAAAGAACGGAAAAGGGACGGGAAAAATTTCGAATAATTAAGATAATTAGACTATAATCAATTT
GTTTAAACTAGGCCTGAAT TTTTGGGAATTG                                                                                                                                                                                                                                                            
||||||||||||||||||| ||||||||||||                                                                                                                                                                                                                                                            T
CAAATTTGATCCGGACTTA AAAGCCCTTCCC                                                                                                                                                                                                                                                            
                   A            ATTGAGTAGGGTAGGGCATAGGCAGGGCTTTAAGAGTTTAAAAAACCCTTTCCTTTTAACATTAAAGGGTAAGCCCAAACTTTTATTATAAACTTACCCATTCCCTTTCCCATCCCTGCCCTTACCCTATTGGGTTTGAAGGGTAACCTATTAATATATTCACTTTAAAATCTCTAAAGCCAATTAACTTTAAAAAAAAATTATTATTTATTACTTAAAAGATTAATTGTTTATTATTATAAAATTTTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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