SE0650054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11032
  • Thellungiella halophila
  • SE0650054
  • PIF/harbinger
  • To21
  • scaffold_13:326956-327252
  • TAA
  • AGAGCATGAACATTGTTGAAACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G              AAA   -AATT G         TAAA  T    AATATTTTTTATTAAAATAGAAAGAATAATGATGAAACATGTGTCAGGAAAAAGGTGAGGAAGGAAAAAATATTTTTTTTCCTCCATATTGAAGAACCA
  AGA CATGAACATTGTTG   CTC     G GTCTCTTAA    CT TTTT                                                                                                   
  ||| ||||||||||||||   |||     | |||||||||    || ||||                                                                                                   A
  TCT GTACTTGTAACGAC   GAG     C TAGAGAATT    TT TATT                                                                                                   
AA   G              --A   AATGT G         ----  -    TATAATAATAAAATTAGTCACAAAATACATTTTCATCTCTTGTGCAGCGAATATAATCTTGCGTATTCTCTGCAAAAATTTTGTACACTTACGTATACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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