Plant MITE

SE0650059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11037
Thellungiella halophila
SE0650059
PIF/harbinger
To22
scaffold_10:3377047-3377689
GAT
TGTGTTGGG

Secondary structure and sequence

TSD TIR

5'

3'

GA G       ATATCAA    A           GAA  T     ----------   ATATGGTCTAGTATATAAGCAAGATGTCCAACAGTTTTAGTATGATACCTTTTGGGAAGGAGCCCAAAAACAAATATGGGCGGACTTTGCTACTTGGGCTTAAAACGGACAATATCATACTAACAAGGAGTTGGACATGAGCTTGAAAAACCCAACAATTGGTATCAGAGCAAAGTTCTGGAAAATGTGAACCTGGACAAGTGGGTGTGGGCGGTGTGTTCGGTGTGGGAGAGAGAGAGCCCTCAAAGTGATCTTGCGATCGGGGTGCTGGT
  T TGTTGGG       TCAA GTCCCACATCG   GT TTAGA          CCA                                                                                                                                                                                                                                                                                
  | |||||||       |||| |||||||||||   || |||||          |||                                                                                                                                                                                                                                                                                 
  G ACAACCC       AGTT CAGGTACAGAT   TG TAAAT          AAC                                                                                                                                                                                                                                                                                
TA G       ---GAAA    -           ---  A     AACTATAACA   GAAACTCAATTTCACCGTTTTAGGCATGCCTAAACAAAAATCTCAAGAAAGGGTTTTCTAGAGTATAATTTAACAATCTGTAGAACAAATATATGATTTGGTATAATCAGATTTGAAGGTTACACTCTACCTAACTATAGGGTTGTTAGGGAAAGAGTTTGGTTCTTGGTGTATTTGGACACCGAAAGGTTGGAGAACGTTTTGAACCGTGGGTATAACATAGCGGGTTGGATTAGGAAGCGCGTGGCAATCTTTATGAAAGCTGTGTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650059

GATGTGTTGGGATATCAATCAAAGTCCCACATCGGAAGTTTTAGACCAATATGGTCTAGTATATAAGCAAGATGTCCAACAGTTTTAGTATGATACCTTTTGGGAAGGAGCCCAAAAACAAATATGGGCGGACTTTGCTACTTGGGCTTAAAACGGACAATATCATACTAACAAGGAGTTGGACATGAGCTTGAAAAACCCAACAATTGGTATCAGAGCAAAGTTCTGGAAAATGTGAACCTGGACAAGTGGGTGTGGGCGGTGTGTTCGGTGTGGGAGAGAGAGAGCCCTCAAAGTGATCTTGCGATCGGGGTGCTGGTACTTTGTGTCGAAAGTATTTCTAACGGTGCGCGAAGGATTAGGTTGGGCGATACAATATGGGTGCCAAGTTTTGCAAGAGGTTGGAAAGCCACAGGTTTATGTGGTTCTTGGTTTGAGAAAGGGATTGTTGGGATATCAATCCATCTCACATTGGAAGTTTAGACTAATATGGTTTAGTATATAAACAAGATGTCTAACAATTTAATATGAGATCTTTTGGGAAAGAACTCTAAAAACAAATCCGTACGGATTTTGCCACTTTAACTCAAAGCAAACAATATCAATAAATAGTTAGACATGGACTTGAAAAGCCCAACAGGAT

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