SE0630060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11038
  • Thellungiella halophila
  • SE0630060
  • hAT
  • Hat19
  • scaffold_4:13708015-13708489
  • GTTTTAAT
  • GTTTTAATCAGGGGTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
   TT   C          - -----------AAAAAACCGAACCA       CCAATTGAACCAACCGA   --- A  --    ACTGAACCGATCCATTTTTAATATATAACCTGTTTGGTTGAAGTATTTCACAACCTGAAAGGTTCGGTTAAGTTTGGTTTTAAACCAAACCAAACCAAAAAACTCATATACTTATTTTATTTAACTTTTTAGTTAGTTCATAATATTAGTTTTTTTGAAATATAGTGAA
GTT  AAT AGGGGTGGGC C                         AACTGAA                 ACT   T AA  CCAA                                                                                                                                                                         
|||  ||| |||||||||| |                         |||||||                 |||   | ||  ||||                                                                                                                                                                          
TAA  TTG TCCCCACCCG G                         CTCAAAC                 CAA   A AA  AATT                                                                                                                                                                         
   TT   A          T AAACCAAATAAAAGCCCAATCCAAA       -----------------   GCC -  CC    AAGCCCAAGTTATTTTAAGATTGGTTTGAGTTGACTTTATTCAAACCAAGCCAAATTTAAGCCAAACCAAATTAAGCTAAACCAAAATCTAACCAAATCAAGATTAAGTCAAAATTTTTTAAGTCAAACTTCTTTTCTTATCTCACAACCAAATCCACTTTAAAGTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End