Plant MITE

SE0630061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11039
Thellungiella halophila
SE0630061
hAT
Hat20
scaffold_8:5211634-5212230
CTTGCGAG
CTTGCGAGTAGGGCTGGGC

Secondary structure and sequence

TSD TIR

5'

3'

             C     A   T     TT   ---    CTTTGATCCGTTATTCGTCTCAATTCGATCCGAAAAATCCGGATATTCATAATTTTATGGAGCAAAGCAAATACTAAAACTTAATATCCGTTAAAAACGAAGCAAATCACAAATACTAAAAAAAAATTAAAACGGATATCCGCTCCGCTCCGATATAAATATATATGTATATATAGATAGATAATAATTCATATAAAGTGTATAATTATTATATATAAATATAATTTTTTGAGTTTTTGTTTATAAATTTGATTATTTAAA
CTTGCGAGTAGGG TGGGC AAA ATCTG  ATA   TTTG                                                                                                                                                                                                                                                                     
||||||||||||| ||||| ||| |||||  |||   ||||                                                                                                                                                                                                                                                                      
GAGCGTTCATCCC ACCCG CGC CTCGC  CTA   GCCT                                                                                                                                                                                                                                                                     
             C     -   -     --   TAG    TAAAACCTCTATAGGCACTAGGCGAGGCGAGGCCGGCCTATTAATAAAAAGACTAAGCATAGGCGAGGCATTAATAAGCCTATAGGCAAAAGGCCTATAGGCGGTTTTTAGACTTATAAACGGCATATAGGCTAAGCCGGGTTTTTTTTATAAATTTATTATTATATAAATTTTATTTTTTTATTTTTTTAGTTTTAAATTAATTTTTACTGTTATAAAAGAAATTTTTTATAAAAAAAGAATTAAATAATTCAAAATTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0630061

CTTGCGAGTAGGGCTGGGCAAAATATCTGTTATATTTGCTTTGATCCGTTATTCGTCTCAATTCGATCCGAAAAATCCGGATATTCATAATTTTATGGAGCAAAGCAAATACTAAAACTTAATATCCGTTAAAAACGAAGCAAATCACAAATACTAAAAAAAAATTAAAACGGATATCCGCTCCGCTCCGATATAAATATATATGTATATATAGATAGATAATAATTCATATAAAGTGTATAATTATTATATATAAATATAATTTTTTGAGTTTTTGTTTATAAATTTGATTATTTAAATATTAAAACTTAATAAATTAAGAAAAAAATATTTTTTAAAGAAAATATTGTCATTTTTAATTAAATTTTGATTTTTTTATTTTTTTATTTTAAATATATTATTATTTAAATATTTTTTTTGGGCCGAATCGGATATACGGCAAATATTCAGATTTTTGGCGGATATCCGGAAAACGGATATCCGAATAATTACGGAGCGGATACGAATCAGAAAAATAATTATCCGGCCGGAGCGGAGCGGATCACGGATATCTCCAAAATTCCGGATATCCGCTCCGCGCCCACCCCTACTTGCGAG

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