SE0630062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11040
  • Thellungiella halophila
  • SE0630062
  • hAT
  • Hat21
  • scaffold_1:18379604-18380000
  • GCTAGAAG
  • CTAGAAGCAGTGTTCTAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
  G    AAG        -TA    TC    TAGGCGACCGTCTAGGCACTGCCTAGGCGCTAGGCATTGACAGACAGCCCGCCTAGGTATTAGGCGTTCATAGACCGTGATGGTTACTTCTTAAACGTTTTATATATGATATTTATAAAAAAAAATGTTTTTTATGTGTAATTTAAATTTTGAATATATATTTAAGATATA
   CTAG   CAGTGTTC   AAAG  GGTC                                                                                                                                                                           
   ||||   ||||||||   ||||  ||||                                                                                                                                                                            
   GATC   GTCACAAG   TTTC  GCGA                                                                                                                                                                           
GAA    --A        TTC    --    TCCGCAATCCGCCCGCCACTATTTTGCGGATCACGGATCTTGCGGATCAGCCTCAGATCCGATAAAAATCCGCAAAATCTGCAAATGTTTATTTATTTAAATAATATATAAATATCTCACGTTATATAATTTAATGTACTAAAAAAATATTTATTATTTCAAATGTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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