Plant MITE

SE0650067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11045
Thellungiella halophila
SE0650067
PIF/harbinger
To24
scaffold_11:3986757-3986966
TTA
TTAGA

Secondary structure and sequence

TSD TIR

5'

3'

                   CCATG           C    CA     -       G GTTGCTAACGAATATTTTGAATTAAAATAATGAAAAGGAAGTCCAAAATATAAAGGC
              TTAGA     TTCATTGAGAG CCTT  CATTT TTTAATT G                                                         
              |||||     ||||||||||| ||||  ||||| ||||||| |                                                         T
              AATCT     AAGTAATTTTC AGGA  ATTCT ATAATAT T                                                         
ATTCCCGTACATGT     -CCTA           A    --     T       - ATAAAAAAATATTCGTTAGAAGATTCCTGGTCGGGATTTTTGAGAAGACGTTCTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650067

TTAGACCATGTTCATTGAGAGCCCTTCACATTTTTTAATTGGGTTGCTAACGAATATTTTGAATTAAAATAATGAAAAGGAAGTCCAAAATATAAAGGCTGATTCTTGCAGAAGAGTTTTTAGGGCTGGTCCTTAGAAGATTGCTTATAAAAAAATATTATAATATTCTTAAGGAACTTTTAATGAAATCCTCTAATGTACATGCCCTTA

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