SE0650072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11050
  • Thellungiella halophila
  • SE0650072
  • PIF/harbinger
  • To25
  • scaffold_3:5684405-5684647
  • TAA
  • AGACCATCTCCAACCATGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            ACC     ----------TTA    A   AGTGTAAGAGTTCTCAAAACAATAATATAAAATGAAATCATGTACAAAATGAAGAGAAGAGTCTTTAAATGCATAAAAAGAGGTT
  AGACCATCTCCA   ATGGG             TTGA AAC                                                                                     
  ||||||||||||   |||||             |||| |||                                                                                      
  TCTGGTGGAGGT   TACCC             TTCG GAA                                                                                     
AA            ---     TCCTAAAATCTTC    A   GTATAATATACATATCTTTTATTATCAATTTATAATATTTCCGAAAATTTTATCCTCTCTCCCATAGGTTTTAGAGAACAAAGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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