SE0630073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11051
  • Thellungiella halophila
  • SE0630073
  • hAT
  • Hat23
  • scaffold_5:14919192-14919591
  • GAGATAAG
  • CAGTGTCGTGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGATAAG   T         A     ATAGAGGTCTAAGACAAATTTTAAATCTTTGTAAATTTTTTTTTTTTAAACTTTTGTTTTAATAATTTTATGTATCATTATAAACTAAACTCTATTTTAAAGTAAGAATTTAGTCATTTATTCTATTTTATGTATGTATTAGTATAATGATATAAGTATATAGATGTAAGTAT
        CAG GTCGTGCCT GACTT                                                                                                                                                                             
        ||| ||||||||| |||||                                                                                                                                                                              
        GTC CGGCACGGA GGGAA                                                                                                                                                                             
GAATAGAG   T         A     TAAGTTTTTTCCGTAAATAAAATCCGGTGTTTGTTTTAAAGTTTTAATTCCCGGTGTAGAAACATTATTCATCAAATTAATTAATCATCTAACTTAATTGAAAATATACACCAAAATGGGTAATATTTATATCTAACATACTAATTTAAAATCCTAAAATTTGTTTTATAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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