SE0650074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11052
  • Thellungiella halophila
  • SE0650074
  • PIF/harbinger
  • To12
  • scaffold_8:3260745-3261014
  • TAA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C         CCCTAC    AATTTCACTGCAAAATAAAGTTTGGAGCAAGATTATCTCCAACCCTACTCCAAATCTCACTCCAAAATGGAGTAAAAAATGGAGTTACTCCATATATGGAGCAAAAAATA
  AGA CATCTCCAA      TGCA                                                                                                              
  ||| |||||||||      ||||                                                                                                               
  TCT GTAGAGGTT      TGAG                                                                                                              
AA   C         ACATAC    GTATAAAAAGAGATAAAACCTTATTGAGGTTTTACCTCAACATAAAATGAGATTACATTCGAAGTAAAAATAAGGTTTTACCTCAATACTGATTTTTTTACCTCTTTGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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