Plant MITE

SE0650075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11053
Thellungiella halophila
SE0650075
PIF/harbinger
To18
scaffold_8:2126151-2126686
TTA
AGAGCATCTGCAATGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 ACTCTATTTC        -----A      TTTTTAGAGTAAAATCATCTACATTGGTACTCTATATCTTACTCTATAAATAGAGAAATGAACAGTATATCTCTATATTTAGAGAAATACTGTTCATTTCTCTATTTATAGAGTAGAACTTTTTTATTTACAAAACAATCTTTAAACTTTCATATCTTTTTATTTGACACTTAAACAATAAGATACCACACAATATTATACTTAATTAAACTATATTAATAATAAT
  AGAGCATCTGCAATGGT          TGCCTCTA      ACTCTA                                                                                                                                                                                                                                  
  |||||||||||||||||          ||||||||      ||||||                                                                                                                                                                                                                                  T
  TCTCGTAGACGTTACCA          ACGGAGAT      TGAGAT                                                                                                                                                                                                                                  
AT                 ----------        ATAAAA      TTTTATCTCAAGAGATATTTATCTCTTCCCCAAATGACGTTACCAACGAAGATATAAACTGACATTTAGAATAATAATTAACGAATATTCAGGAAAATGAAAATTTACAAAATTTTTTAAAGATAAATAAAATCAAAATTGTTATTAAATTGTATTAATATGAAATTTTAAAAAATAAATAATATAAAAAAACAAAATAAAATTTGAAAATTTACTAATATATTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0650075

TTAGAGCATCTGCAATGGTACTCTATTTCTGCCTCTAAACTCTATTTTTAGAGTAAAATCATCTACATTGGTACTCTATATCTTACTCTATAAATAGAGAAATGAACAGTATATCTCTATATTTAGAGAAATACTGTTCATTTCTCTATTTATAGAGTAGAACTTTTTTATTTACAAAACAATCTTTAAACTTTCATATCTTTTTATTTGACACTTAAACAATAAGATACCACACAATATTATACTTAATTAAACTATATTAATAATAATTAGTTATATAATCATTTAAAAGTTTAAAATAAAACAAAAAAATATAATAAATAAAAAATTTTAAAGTATAATTATGTTAAATTATTGTTAAAACTAAAATAAATAGAAATTTTTTAAAACATTTAAAAGTAAAAGGACTTATAAGCAATTAATAATAAGATTTACAGTCAAATATAGAAGCAACCATTGCAGTAAACCCCTTCTCTATTTATAGAGAACTCTATTTTTAGAGTAAAATATAGAGGCAACCATTGCAGATGCTCTTA

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